OBO Foundry dashboard analysis¶

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/tmp/ipykernel_5336/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            25
RDF/XML Syntax    25
unknown           12
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 51 5180.492063 20753.354545 0.0 63.5 296.0 1918.0 147264.0
Declaration 51 1098.349206 3601.573295 0.0 28.0 217.0 788.5 27269.0
SubClassOf 49 1256.603175 4305.051128 0.0 5.0 141.0 729.0 29117.0
ObjectPropertyRange 45 34.666667 71.647885 0.0 0.0 14.0 31.0 520.0
ObjectPropertyDomain 44 32.650794 71.306960 0.0 0.0 10.0 28.5 517.0
DataPropertyRange 42 12.873016 26.888355 0.0 0.0 4.0 10.5 170.0
SubObjectPropertyOf 38 48.777778 104.431247 0.0 0.0 10.0 55.0 709.0
DataPropertyDomain 36 12.365079 36.840678 0.0 0.0 2.0 5.0 235.0
DisjointClasses 35 209.888889 1545.528682 0.0 0.0 1.0 20.0 12277.0
InverseObjectProperties 35 10.079365 23.447472 0.0 0.0 1.0 8.0 126.0
ClassAssertion 34 149.539683 516.690955 0.0 0.0 1.0 20.0 3053.0
EquivalentClasses 31 116.142857 586.333491 0.0 0.0 0.0 39.0 4640.0
SubDataPropertyOf 26 8.619048 31.667338 0.0 0.0 0.0 6.0 242.0
SubAnnotationPropertyOf 25 9.492063 27.109023 0.0 0.0 0.0 5.5 179.0
TransitiveObjectProperty 25 3.253968 7.002231 0.0 0.0 0.0 4.0 38.0
FunctionalObjectProperty 24 2.269841 4.235816 0.0 0.0 0.0 3.5 18.0
FunctionalDataProperty 22 1.968254 4.974024 0.0 0.0 0.0 2.0 26.0
InverseFunctionalObjectProperty 20 1.190476 2.481266 0.0 0.0 0.0 1.0 12.0
IrrefexiveObjectProperty 18 2.492063 5.877439 0.0 0.0 0.0 1.0 24.0
SymmetricObjectProperty 17 2.539683 6.497705 0.0 0.0 0.0 1.0 35.0
AnnotationPropertyRangeOf 17 4.968254 17.818954 0.0 0.0 0.0 1.0 134.0
ObjectPropertyAssertion 14 343.206349 1650.427502 0.0 0.0 0.0 0.0 10267.0
AsymmetricObjectProperty 14 2.206349 5.403579 0.0 0.0 0.0 0.0 20.0
DataPropertyAssertion 13 110.634921 510.285856 0.0 0.0 0.0 0.0 3617.0
DisjointUnion 12 7.079365 20.590713 0.0 0.0 0.0 0.0 116.0
SubPropertyChainOf 11 3.349206 15.190361 0.0 0.0 0.0 0.0 103.0
EquivalentObjectProperties 8 1.079365 4.756325 0.0 0.0 0.0 0.0 36.0
AnnotationPropertyDomain 7 0.222222 0.850890 0.0 0.0 0.0 0.0 6.0
ReflexiveObjectProperty 7 0.158730 0.514510 0.0 0.0 0.0 0.0 3.0
DifferentIndividuals 7 0.634921 3.244358 0.0 0.0 0.0 0.0 25.0
DisjointObjectProperties 5 0.603175 2.679310 0.0 0.0 0.0 0.0 17.0
Rule 4 0.793651 3.650712 0.0 0.0 0.0 0.0 25.0
EquivalentDataProperties 2 0.238095 1.399473 0.0 0.0 0.0 0.0 10.0
SameIndividual 2 1.984127 14.878532 0.0 0.0 0.0 0.0 118.0
DatatypeDefinition 2 0.349206 2.417401 0.0 0.0 0.0 0.0 19.0
NegativeObjectPropertyAssertion 1 0.015873 0.125988 0.0 0.0 0.0 0.0 1.0
DisjointDataProperties 1 0.031746 0.251976 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 51 4407.730159 13502.246419 0.0 55.0 512.0 2515.0 84618.0
ObjectUnionOf 32 9.730159 19.043419 0.0 0.0 1.0 11.0 88.0
ObjectAllValuesFrom 31 22.904762 57.594723 0.0 0.0 0.0 18.5 400.0
ObjectSomeValuesFrom 30 291.015873 1604.197935 0.0 0.0 0.0 82.5 12660.0
ObjectExactCardinality 26 5.904762 17.729795 0.0 0.0 0.0 3.0 115.0
ObjectIntersectionOf 25 97.682540 594.410302 0.0 0.0 0.0 16.5 4707.0
DataExactCardinality 22 2.460317 4.442556 0.0 0.0 0.0 3.0 18.0
DataAllValuesFrom 17 0.825397 1.718398 0.0 0.0 0.0 1.0 9.0
ObjectComplementOf 16 3.857143 19.867186 0.0 0.0 0.0 0.5 157.0
DataHasValue 16 27.777778 76.189586 0.0 0.0 0.0 1.5 494.0
ObjectHasValue 14 10.650794 39.669668 0.0 0.0 0.0 0.0 211.0
ObjectMinCardinality 13 1.444444 4.535799 0.0 0.0 0.0 0.0 28.0
DataSomeValuesFrom 13 1.714286 5.119314 0.0 0.0 0.0 0.0 33.0
ObjectMaxCardinality 11 15.079365 112.613427 0.0 0.0 0.0 0.0 894.0
ObjectOneOf 9 11.904762 52.600354 0.0 0.0 0.0 0.0 275.0
DataMinCardinality 6 0.396825 2.524331 0.0 0.0 0.0 0.0 20.0
DataMaxCardinality 6 1.825397 9.647897 0.0 0.0 0.0 0.0 74.0
ObjectHasSelf 1 0.015873 0.125988 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
17 FOAF 0.318 0.333 0.302
38 PROVO 0.316 0.504 0.127
19 IAO 0.296 0.593 0.000
22 MDO 0.285 0.571 0.000
50 enanomapper 0.285 0.571 0.000
32 OEO 0.285 0.571 0.000
57 nfdicore 0.275 0.549 0.000
39 QUDT 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
47 UO 0.264 0.527 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
3 CCO 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
26 MatOnto 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
42 SEMMD 0.252 0.504 0.000
51 m4i 0.241 0.482 0.000
41 SAREF 0.241 0.482 0.000
33 OM 0.234 0.467 0.000
44 SO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
45 SP 0.234 0.467 0.000
28 NPO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
30 OA 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
5 CIF-core 0.222 0.444 0.000
52 mat 0.222 0.444 0.000
29 NanoMine 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
55 mvc 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
24 MOL_TENSILE 0.208 0.416 0.000
59 opmw 0.200 0.400 0.000
35 P-Plan 0.200 0.400 0.000
48 WILD 0.200 0.400 0.000
61 ssos 0.189 0.378 0.000
49 bmo 0.189 0.378 0.000
23 MOL_BRINELL 0.189 0.378 0.000
46 SSN 0.189 0.378 0.000
34 OSMO 0.189 0.378 0.000
53 matinfo 0.167 0.333 0.000
40 QUDV 0.167 0.333 0.000
58 ontorule 0.155 0.311 0.000
36 PATO 0.000 0.000 0.127
25 MSEO 0.000 0.000 0.000
9 EMMO_BVC 0.000 0.000 0.000
31 OBO 0.000 0.000 0.000
10 EMMO_BattINFO 0.000 0.000 0.000
21 MAMBO 0.000 0.000 0.000
27 MaterialsMine 0.000 0.000 0.000
37 PMDCO 0.000 0.000 0.000
43 SKOS_MDO 0.000 0.000 0.000
54 metal-alloy 0.000 0.000 0.000
56 mwo 0.000 0.000 0.000
60 periodictable 0.000 0.000 0.000
62 vimmp 0.000 0.000 0.000
0 AMONTOLOGY 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 63.0 0.184397 0.104819 0.0 0.167 0.222 0.252 0.318
score_dash 63.0 0.361778 0.204714 0.0 0.333 0.444 0.504 0.593
score_impact 63.0 0.008825 0.043728 0.0 0.000 0.000 0.000 0.302

OBO dependency graph